Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJF63663.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
AJF63662.1
Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.784
panD
Hypothetical protein; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.650
AJF69198.1
SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.536
AJF69502.1
oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.499
AJF68313.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
AJF63664.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.486
Your Current Organism:
Streptomyces vietnamensis
NCBI taxonomy Id: 362257
Other names: CCTCC M 205143, CCTCC:M:205143, IAM 15340, JCM 21785, S. vietnamensis, Streptomyces vietnamensis Zhu et al. 2007, strain GIMV4.0001
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