STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF64265.1Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)    
Predicted Functional Partners:
AJF68866.1
Major pilin protein fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.757
AJF69599.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
AJF70187.1
Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.736
AJF64264.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.727
AJF63664.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.565
AJF69499.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.496
AJF65114.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.492
AJF64263.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
AJF64387.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.471
AJF67378.1
EF hand repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.401
Your Current Organism:
Streptomyces vietnamensis
NCBI taxonomy Id: 362257
Other names: CCTCC M 205143, CCTCC:M:205143, IAM 15340, JCM 21785, S. vietnamensis, Streptomyces vietnamensis Zhu et al. 2007, strain GIMV4.0001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.