Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RC62_1381 | RC62_1382 | TonB-dependent receptor family protein. | FecR anti-FecI sigma factor. | 0.952 |
RC62_1381 | RC62_1383 | TonB-dependent receptor family protein. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.893 |
RC62_1381 | RC62_1384 | TonB-dependent receptor family protein. | Hypothetical protein. | 0.859 |
RC62_1381 | RC62_1720 | TonB-dependent receptor family protein. | TonB family protein. | 0.536 |
RC62_1381 | RC62_1895 | TonB-dependent receptor family protein. | Peptidase family M56, BlaR1. | 0.536 |
RC62_1381 | RC62_2377 | TonB-dependent receptor family protein. | Hypothetical protein. | 0.641 |
RC62_1381 | RC62_261 | TonB-dependent receptor family protein. | Protein TonB. | 0.536 |
RC62_1381 | RC62_2975 | TonB-dependent receptor family protein. | Putative lipoprotein. | 0.656 |
RC62_1381 | RC62_3087 | TonB-dependent receptor family protein. | Outer membrane transport energization protein TonB. | 0.536 |
RC62_1381 | RC62_3451 | TonB-dependent receptor family protein. | Hypothetical protein. | 0.581 |
RC62_1382 | RC62_1381 | FecR anti-FecI sigma factor. | TonB-dependent receptor family protein. | 0.952 |
RC62_1382 | RC62_1383 | FecR anti-FecI sigma factor. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.918 |
RC62_1382 | RC62_1384 | FecR anti-FecI sigma factor. | Hypothetical protein. | 0.781 |
RC62_1383 | RC62_1381 | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent receptor family protein. | 0.893 |
RC62_1383 | RC62_1382 | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | FecR anti-FecI sigma factor. | 0.918 |
RC62_1383 | RC62_1384 | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.793 |
RC62_1384 | RC62_1381 | Hypothetical protein. | TonB-dependent receptor family protein. | 0.859 |
RC62_1384 | RC62_1382 | Hypothetical protein. | FecR anti-FecI sigma factor. | 0.781 |
RC62_1384 | RC62_1383 | Hypothetical protein. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.793 |
RC62_1384 | RC62_2377 | Hypothetical protein. | Hypothetical protein. | 0.604 |
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