STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_162Vault protein inter-alpha-trypsin. (791 aa)    
Predicted Functional Partners:
RC62_102
Mg-chelatase subunit ChlI-like protein.
  
 0.835
RC62_163
Transmembrane exosortase (Exosortase EpsH).
       0.800
RC62_1205
Prokaryotic RING finger family 4 protein.
  
     0.623
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.617
RC62_2645
DUF2459 domain containing protein.
  
     0.585
RC62_574
Lumazine bd 2 domain containing protein.
  
     0.568
RC62_599
Putative membrane protein.
  
     0.566
RC62_371
Putative membrane protein.
  
     0.537
RC62_410
Phytanoyl-CoA dioxygenase.
  
     0.533
RC62_4099
Nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
  0.509
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.