STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_2011TonB-dependent receptor. (879 aa)    
Predicted Functional Partners:
RC62_2010
Major facilitator superfamily MFS 1.
 
     0.837
RC62_2012
Transcriptional regulator, LacI family.
 
     0.620
RC62_3735
TonB-dependent receptor plug.
  
     0.601
RC62_2009
Putative alpha,alpha-trehalase Glycoside hydrolase family 37.
       0.569
RC62_1720
TonB family protein.
    
  0.504
RC62_1895
Peptidase family M56, BlaR1.
    
  0.504
RC62_261
Protein TonB.
    
  0.504
RC62_3087
Outer membrane transport energization protein TonB.
    
  0.504
RC62_3328
Hypothetical protein.
    
  0.504
RC62_3997
Gram-negative bacterial tonB protein.
    
  0.504
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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