STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_2075Beta-lactamase domain-containing protein. (285 aa)    
Predicted Functional Partners:
RC62_1325
Dinucleotide-utilizing enzyme; Possibly involved in molybdopterin or thiamin biosynthesis.
  
 0.717
RC62_1644
Dinucleotide-utilizing enzyme; Possibly involved in molybdopterin or thiamin biosynthesis.
  
 0.717
RC62_1305
Rhodanese domain-containing protein.
  
 0.680
RC62_4099
Nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.657
RC62_4107
Nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.657
RC62_4108
Beta-ketoacyl synthase.
   
 0.630
RC62_4006
Thioredoxin family protein.
  
 0.618
RC62_2076
Hypothetical protein.
       0.561
RC62_3003
FAD/FMN-dependent dehydrogenase.
    
 0.514
RC62_1036
Beta-lactamase domain-containing protein.
   
  0.474
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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