STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_208Hypothetical protein. (169 aa)    
Predicted Functional Partners:
RC62_209
Hypothetical protein.
      
0.693
RC62_1888
DUF4407 domain containing protein.
  
     0.577
RC62_1958
30S ribosomal protein S16.
  
     0.541
RC62_207
Hypothetical protein.
 
    
0.477
RC62_3803
Adenylosuccinate lyase.
  
     0.468
RC62_4575
Putative outer membrane protein, OmpA family.
  
     0.460
RC62_201
Lipoprotein.
  
     0.444
RC62_3599
Hypothetical protein.
  
     0.437
RC62_4682
Competence protein.
  
     0.430
RC62_2681
Hypothetical protein.
  
     0.419
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.