STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_2183OMP b-brl 2 domain containing protein. (204 aa)    
Predicted Functional Partners:
RC62_2184
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ.
 
     0.819
RC62_2185
Hypothetical protein.
 
     0.814
RC62_2182
Hypothetical protein.
 
     0.782
RC62_2181
Outer membrane lipoprotein carrier protein LolA.
 
    0.761
RC62_2186
Putative beta-glycosyltransferase Glycosyltransferase family 2.
 
     0.751
RC62_2187
Acyltransferase MMPL family.
 
     0.586
RC62_2189
isopenicillin-N N-acyltransferase; Peptidase C45/acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K10852/isopenicillin-N N-acyltransferase.
 
     0.580
RC62_2188
Phytoene dehydrogenase-like oxidoreductase.
 
     0.578
RC62_2190
Coenzyme F390 synthetase.
 
     0.529
RC62_2179
3-oxoacyl-(Acyl-carrier-protein) synthase-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.485
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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