STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_2794Hyalin repeat protein. (533 aa)    
Predicted Functional Partners:
RC62_1132
Fn3 domain containing protein.
  
  0.664
RC62_4228
Hypothetical protein.
  
  0.545
RC62_2736
Subtilisin-like serine protease; Belongs to the peptidase S8 family.
  
   0.469
RC62_2795
Transcriptional regulator, XRE family.
       0.456
RC62_4473
RemA protein.
  
     0.449
RC62_777
FG-GAP repeat protein.
    
  0.449
RC62_1826
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
   
  0.448
RC62_2219
Peptidase family S41 family protein.
   
  0.448
RC62_2524
C-terminal processing peptidase.
   
  0.448
RC62_258
Peptidase S41.
   
  0.448
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.