Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RC62_2374 | RC62_2929 | RC62_2374 | RC62_2929 | RNA polymerase Rpb6. | GreA/GreB family elongation factor. | 0.743 |
RC62_2374 | RC62_3699 | RC62_2374 | RC62_3699 | RNA polymerase Rpb6. | GreA/GreB family elongation factor. | 0.743 |
RC62_2374 | rpoA | RC62_2374 | RC62_3856 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
RC62_2374 | rpoB | RC62_2374 | RC62_172 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
RC62_2374 | rpoC | RC62_2374 | RC62_171 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
RC62_2374 | rpsO | RC62_2374 | RC62_1811 | RNA polymerase Rpb6. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.841 |
RC62_2929 | RC62_2374 | RC62_2929 | RC62_2374 | GreA/GreB family elongation factor. | RNA polymerase Rpb6. | 0.743 |
RC62_2929 | RC62_3699 | RC62_2929 | RC62_3699 | GreA/GreB family elongation factor. | GreA/GreB family elongation factor. | 0.766 |
RC62_2929 | cmk | RC62_2929 | RC62_3259 | GreA/GreB family elongation factor. | Cytidylate kinase. | 0.421 |
RC62_2929 | dut | RC62_2929 | RC62_2201 | GreA/GreB family elongation factor. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.435 |
RC62_2929 | pyrG | RC62_2929 | RC62_2740 | GreA/GreB family elongation factor. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.417 |
RC62_2929 | pyrH | RC62_2929 | RC62_4250 | GreA/GreB family elongation factor. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.424 |
RC62_2929 | rpoA | RC62_2929 | RC62_3856 | GreA/GreB family elongation factor. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.742 |
RC62_2929 | rpoB | RC62_2929 | RC62_172 | GreA/GreB family elongation factor. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.747 |
RC62_2929 | rpoC | RC62_2929 | RC62_171 | GreA/GreB family elongation factor. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.795 |
RC62_2929 | rpsO | RC62_2929 | RC62_1811 | GreA/GreB family elongation factor. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.485 |
RC62_3699 | RC62_2374 | RC62_3699 | RC62_2374 | GreA/GreB family elongation factor. | RNA polymerase Rpb6. | 0.743 |
RC62_3699 | RC62_2929 | RC62_3699 | RC62_2929 | GreA/GreB family elongation factor. | GreA/GreB family elongation factor. | 0.766 |
RC62_3699 | cmk | RC62_3699 | RC62_3259 | GreA/GreB family elongation factor. | Cytidylate kinase. | 0.421 |
RC62_3699 | dut | RC62_3699 | RC62_2201 | GreA/GreB family elongation factor. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.435 |
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