STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3Pectate lyase. (666 aa)    
Predicted Functional Partners:
RC62_2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.908
RC62_2044
Pectate lyase/Amb allergen.
  
  
  0.874
RC62_2043
Pectate lyase/Amb allergen.
  
  
  0.872
RC62_5
Putative d-4,5-unsaturated beta-glycuronidase Glycoside hydrolase family 105.
 
  
  0.857
RC62_2332
Pectate lyase/Amb allergen.
  
  
  0.854
RC62_6
Putative d-4,5-unsaturated beta-glycuronidase Glycoside hydrolase family 105.
 
  
  0.853
RC62_2518
Putative pectin or pectate lyase Polysaccharide lyase family 1.
  
  
  0.851
RC62_4
Putative beta-xylosidase/alpha-L-arabinofuranosidase Glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.847
RC62_12
Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.841
RC62_7
Putative d-4,5-unsaturated beta-glycuronidase Glycoside hydrolase family 105.
 
  
  0.841
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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