STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3003FAD/FMN-dependent dehydrogenase. (968 aa)    
Predicted Functional Partners:
RC62_2965
Glutamate synthase (NADH) large subunit.
    
 0.974
RC62_538
Malic enzyme.
  
 
 0.971
RC62_1506
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit.
   
 0.944
RC62_3382
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit.
   
 0.944
RC62_766
4Fe-4S ferredoxin.
  
 0.935
RC62_2437
Phosphate acetyltransferase.
  
 
 0.930
RC62_1782
Electron transfer flavoprotein, beta subunit.
  
 
 0.921
RC62_4327
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 0.918
RC62_2707
Nitrite reductase.
  
 0.910
RC62_1783
Electron transfer flavoprotein, alpha subunit.
  
 
 0.904
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.