STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_302Glycoside hydrolase; Belongs to the glycosyl hydrolase 2 family. (662 aa)    
Predicted Functional Partners:
RC62_301
Glycoside hydrolase family 2.
 
     0.612
RC62_739
DUF386 domain containing protein.
   
  0.590
RC62_4325
Putative beta-N-acetylglucosaminidase Glycoside hydrolase family 20.
 
   0.580
RC62_298
ROK family protein.
 
  
 0.559
RC62_955
Alpha-galactosidase.
  
  0.553
RC62_1132
Fn3 domain containing protein.
  
 
 0.552
RC62_3587
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.551
RC62_2147
Alpha-L-arabinofuranosidase.
  
  
  0.537
RC62_1463
N-acetyl-beta-hexosaminidase.
 
   0.530
RC62_299
Twin-arginine translocation pathway signal.
 
     0.525
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.