STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3027RagB/SusD family protein. (655 aa)    
Predicted Functional Partners:
RC62_3028
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.953
RC62_1132
Fn3 domain containing protein.
  
  0.664
RC62_4041
SusC-like TonB-dependent receptor.
  
 
   0.661
RC62_4449
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.629
RC62_3036
Hypothetical protein.
  
     0.586
RC62_626
SusC-like TonB-dependent receptor.
  
 
   0.581
RC62_790
SusC-like TonB-dependent receptor.
  
 
   0.581
RC62_196
SusC-like TonB-dependent receptor.
  
 
   0.579
RC62_4447
Hypothetical protein.
  
  
  0.547
RC62_4228
Hypothetical protein.
  
  0.545
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.