Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC62_320GldL protein. (215 aa)    
Predicted Functional Partners:
RC62_319
GldM protein.
 
 
 
 0.996
RC62_321
GldK protein.
 
   
 0.899
RC62_318
Protein GldO.
 
   
 0.863
RC62_317
Protein GldO.
 
   
 0.811
RC62_536
SprA protein.
  
   
 0.806
RC62_1790
PorT protein.
 
   
 0.790
RC62_1685
GldJ protein.
 
   
 0.774
RC62_322
Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; Belongs to the arginase family.
 
     0.769
RC62_1581
SprE protein.
  
   
 0.762
RC62_496
Inorganic polyphosphate/ATP-NAD kinase.
  
     0.753
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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