STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3206Putative lipoprotein. (231 aa)    
Predicted Functional Partners:
RC62_4311
Hypothetical protein.
  
     0.638
RC62_4159
Threonine dehydrogenase and related Zn-dependent dehydrogenase.
  
     0.598
RC62_4623
Putative lipoprotein.
  
     0.595
RC62_1878
Hypothetical protein.
  
     0.574
RC62_3207
Hypothetical protein.
       0.556
RC62_807
Hypothetical protein.
  
     0.536
RC62_1571
Hypothetical protein.
  
     0.498
RC62_4481
Hypothetical protein.
  
     0.496
RC62_862
Hypothetical protein.
  
     0.494
RC62_3220
Putative outer membrane protein.
  
     0.491
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.