STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3208TonB-dependent receptor, plug. (819 aa)    
Predicted Functional Partners:
RC62_3209
Zoocin A peptidase family M23.
       0.825
RC62_1230
Putative lipoprotein.
  
     0.774
RC62_4370
Putative periplasmic ligand-binding sensor protein.
  
     0.730
RC62_3256
Low affinity penicillin binding protein.
  
     0.725
RC62_1686
Peptidase C25.
  
     0.708
RC62_3936
Hypothetical protein.
  
     0.706
RC62_4218
Hypothetical protein.
  
     0.675
RC62_3826
Hemolysin activation/secretion protein.
  
     0.643
RC62_1687
Hypothetical protein.
  
     0.628
RC62_2873
Putative beta-glycosyltransferase Glycosyltransferase family 2.
  
     0.623
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.