Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_3209Zoocin A peptidase family M23. (564 aa)    
Predicted Functional Partners:
RC62_3208
TonB-dependent receptor, plug.
       0.822
RC62_3211
Mis12-Mtw1 protein family.
 
     0.608
RC62_3212
Cell division protein ZapA.
 
     0.608
RC62_3223
DUF4290 domain containing protein.
  
     0.601
RC62_3210
Hypothetical protein.
       0.572
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.556
RC62_386
S-adenosyl-methyltransferase MraW.
  
     0.552
RC62_3233
Hypothetical protein.
  
     0.538
RC62_3446
DUF4258 domain containing protein.
  
     0.527
RC62_986
Plasmid pRiA4b ORF-3-like protein.
  
     0.507
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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