STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3545DNA-binding domain-containing protein, AraC-type. (298 aa)    
Predicted Functional Partners:
RC62_3542
SnoaL 3 domain containing protein.
 
   0.737
RC62_3625
GAF sensor hybrid histidine kinase.
     
 0.619
RC62_3533
Transcriptional regulator, AraC family.
 
     0.570
RC62_3540
Flavodoxin.
 
    0.555
RC62_3544
Aldo/keto reductase, diketogulonate reductase.
    
  0.519
RC62_3541
Hypothetical protein.
 
     0.487
RC62_58
AraC family transcriptional regulator.
  
     0.487
RC62_3543
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein.
       0.484
RC62_4039
DNA-binding domain-containing protein, AraC-type.
  
     0.447
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.