Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_366Cupin domain protein. (153 aa)    
Predicted Functional Partners:
RC62_365
Dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
  0.951
RC62_367
Transcriptional regulator, GntR family.
 
     0.698
RC62_1674
DUF3857 domain containing protein.
  
     0.533
RC62_2315
Fumarylacetoacetase.
    
 0.504
RC62_650
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
    
 0.504
RC62_920
Fumarylacetoacetate (FAA) hydrolase.
    
 0.504
RC62_2460
Hypothetical protein.
     
  0.500
RC62_2839
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase.
    
 0.479
RC62_3661
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase.
    
 0.479
RC62_3670
Monooxygenase FAD-binding.
    
 0.479
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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