STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_366Cupin domain protein. (153 aa)    
Predicted Functional Partners:
RC62_365
Dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
  0.949
RC62_367
Transcriptional regulator, GntR family.
 
     0.698
RC62_1674
DUF3857 domain containing protein.
  
     0.533
RC62_2315
Fumarylacetoacetase.
    
 0.501
RC62_650
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
    
 0.501
RC62_920
Fumarylacetoacetate (FAA) hydrolase.
    
 0.501
RC62_2839
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase.
    
 0.474
RC62_3661
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase.
    
 0.474
RC62_3670
Monooxygenase FAD-binding.
    
 0.474
kmo
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
    
 0.474
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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