Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RC62_1202 | RC62_3746 | Putative transcriptional regulator. | Two-component system response regulator. | 0.478 |
RC62_2248 | RC62_3625 | Multi-sensor hybrid histidine kinase/response regulator. | GAF sensor hybrid histidine kinase. | 0.999 |
RC62_2248 | RC62_3746 | Multi-sensor hybrid histidine kinase/response regulator. | Two-component system response regulator. | 0.584 |
RC62_2248 | RC62_744 | Multi-sensor hybrid histidine kinase/response regulator. | Histidine kinase. | 0.999 |
RC62_3625 | RC62_2248 | GAF sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase/response regulator. | 0.999 |
RC62_3625 | RC62_3746 | GAF sensor hybrid histidine kinase. | Two-component system response regulator. | 0.624 |
RC62_3625 | RC62_566 | GAF sensor hybrid histidine kinase. | Signal transduction histidine kinase LytS. | 0.404 |
RC62_3625 | RC62_744 | GAF sensor hybrid histidine kinase. | Histidine kinase. | 0.999 |
RC62_3625 | RC62_995 | GAF sensor hybrid histidine kinase. | Putative regulator of cell autolysis. | 0.404 |
RC62_3746 | RC62_1202 | Two-component system response regulator. | Putative transcriptional regulator. | 0.478 |
RC62_3746 | RC62_2248 | Two-component system response regulator. | Multi-sensor hybrid histidine kinase/response regulator. | 0.584 |
RC62_3746 | RC62_3625 | Two-component system response regulator. | GAF sensor hybrid histidine kinase. | 0.624 |
RC62_3746 | RC62_4407 | Two-component system response regulator. | Lantibiotic biosynthesis protein. | 0.501 |
RC62_3746 | RC62_566 | Two-component system response regulator. | Signal transduction histidine kinase LytS. | 0.437 |
RC62_3746 | RC62_744 | Two-component system response regulator. | Histidine kinase. | 0.613 |
RC62_3746 | RC62_995 | Two-component system response regulator. | Putative regulator of cell autolysis. | 0.442 |
RC62_4407 | RC62_3746 | Lantibiotic biosynthesis protein. | Two-component system response regulator. | 0.501 |
RC62_566 | RC62_3625 | Signal transduction histidine kinase LytS. | GAF sensor hybrid histidine kinase. | 0.404 |
RC62_566 | RC62_3746 | Signal transduction histidine kinase LytS. | Two-component system response regulator. | 0.437 |
RC62_744 | RC62_2248 | Histidine kinase. | Multi-sensor hybrid histidine kinase/response regulator. | 0.999 |
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