STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3823TonB-dependent receptor plug. (1019 aa)    
Predicted Functional Partners:
RC62_3822
Putative lipoprotein.
 
     0.937
RC62_1459
RagB/SusD domain protein.
     0.736
RC62_3824
RagB/SusD domain protein.
 
     0.733
RC62_303
RagB/SusD domain protein.
     0.728
RC62_3641
RagB/SusD domain protein.
     0.688
RC62_1311
RagB/SusD family protein.
  
 
   0.681
RC62_4316
RagB/SusD domain protein.
     0.624
RC62_4162
TonB family protein.
  
  0.618
RC62_789
RagB/SusD domain protein.
  
 
   0.616
RC62_261
Protein TonB.
  
  0.606
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.