STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_3869Non-specific protein-tyrosine kinase. (816 aa)    
Predicted Functional Partners:
RC62_3868
Periplasmic protein involved in polysaccharide export.
 
 0.999
RC62_3876
Polysaccharide export protein.
  
 0.999
RC62_3934
Sugar phosphotransferase.
 
 
 0.999
RC62_911
UDP-phosphate galactose phosphotransferase.
 
 
 0.998
RC62_3901
Polysaccharide biosynthesis protein CapD.
  
 
 0.929
RC62_3933
O-Antigen ligase.
 
  
 0.881
RC62_1569
Coenzyme F390 synthetase-like protein.
 
  
  0.874
RC62_2576
Serine O-acetyltransferase.
  
 
 0.842
RC62_3870
NAD-dependent epimerase/dehydratase.
 
 
 0.842
RC62_3871
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
     
 0.839
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.