Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RC62_1434 | RC62_1522 | RC62_1434 | RC62_1522 | Cell wall hydrolase/autolysin. | Putative membrane protein. | 0.429 |
RC62_1434 | RC62_4011 | RC62_1434 | RC62_4011 | Cell wall hydrolase/autolysin. | Peptidase family S54, Rhomboid family protein. | 0.537 |
RC62_1434 | RC62_4012 | RC62_1434 | RC62_4012 | Cell wall hydrolase/autolysin. | Peptidase family S54, Rhomboid family protein. | 0.429 |
RC62_1522 | RC62_1434 | RC62_1522 | RC62_1434 | Putative membrane protein. | Cell wall hydrolase/autolysin. | 0.429 |
RC62_1522 | RC62_4011 | RC62_1522 | RC62_4011 | Putative membrane protein. | Peptidase family S54, Rhomboid family protein. | 0.706 |
RC62_1522 | RC62_4680 | RC62_1522 | RC62_4680 | Putative membrane protein. | Hypothetical protein. | 0.609 |
RC62_1522 | ftsH | RC62_1522 | RC62_2486 | Putative membrane protein. | ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.434 |
RC62_1522 | tatA | RC62_1522 | RC62_1560 | Putative membrane protein. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.449 |
RC62_4008 | RC62_4011 | RC62_4008 | RC62_4011 | Hypothetical protein. | Peptidase family S54, Rhomboid family protein. | 0.512 |
RC62_4008 | RC62_4012 | RC62_4008 | RC62_4012 | Hypothetical protein. | Peptidase family S54, Rhomboid family protein. | 0.533 |
RC62_4008 | RC62_4013 | RC62_4008 | RC62_4013 | Hypothetical protein. | Metal-dependent hydrolase. | 0.551 |
RC62_4008 | mutL | RC62_4008 | RC62_4010 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.430 |
RC62_4008 | ribH | RC62_4008 | RC62_4009 | Hypothetical protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.707 |
RC62_4011 | RC62_1434 | RC62_4011 | RC62_1434 | Peptidase family S54, Rhomboid family protein. | Cell wall hydrolase/autolysin. | 0.537 |
RC62_4011 | RC62_1522 | RC62_4011 | RC62_1522 | Peptidase family S54, Rhomboid family protein. | Putative membrane protein. | 0.706 |
RC62_4011 | RC62_4008 | RC62_4011 | RC62_4008 | Peptidase family S54, Rhomboid family protein. | Hypothetical protein. | 0.512 |
RC62_4011 | RC62_4012 | RC62_4011 | RC62_4012 | Peptidase family S54, Rhomboid family protein. | Peptidase family S54, Rhomboid family protein. | 0.772 |
RC62_4011 | RC62_4013 | RC62_4011 | RC62_4013 | Peptidase family S54, Rhomboid family protein. | Metal-dependent hydrolase. | 0.697 |
RC62_4011 | RC62_4680 | RC62_4011 | RC62_4680 | Peptidase family S54, Rhomboid family protein. | Hypothetical protein. | 0.609 |
RC62_4011 | ftsH | RC62_4011 | RC62_2486 | Peptidase family S54, Rhomboid family protein. | ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.535 |
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