Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RC62_185 | RC62_3022 | RC62_185 | RC62_3022 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | DNA segregation ATPase, FtsK/SpoIIIE family. | 0.633 |
RC62_185 | RC62_4018 | RC62_185 | RC62_4018 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | ParB-like partition protein; Belongs to the ParB family. | 0.646 |
RC62_185 | RC62_4019 | RC62_185 | RC62_4019 | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | Cobyrinic acid a,c-diamide synthase. | 0.610 |
RC62_3022 | RC62_185 | RC62_3022 | RC62_185 | DNA segregation ATPase, FtsK/SpoIIIE family. | Tyrosine recombinase XerC; Belongs to the 'phage' integrase family. | 0.633 |
RC62_3022 | RC62_4018 | RC62_3022 | RC62_4018 | DNA segregation ATPase, FtsK/SpoIIIE family. | ParB-like partition protein; Belongs to the ParB family. | 0.807 |
RC62_3022 | RC62_4019 | RC62_3022 | RC62_4019 | DNA segregation ATPase, FtsK/SpoIIIE family. | Cobyrinic acid a,c-diamide synthase. | 0.690 |
RC62_3022 | dnaA | RC62_3022 | RC62_832 | DNA segregation ATPase, FtsK/SpoIIIE family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.583 |
RC62_3022 | xerC | RC62_3022 | RC62_3215 | DNA segregation ATPase, FtsK/SpoIIIE family. | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.616 |
RC62_4014 | RC62_4015 | RC62_4014 | RC62_4015 | WbqC-like protein. | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | 0.727 |
RC62_4014 | RC62_4017 | RC62_4014 | RC62_4017 | WbqC-like protein. | Hypothetical protein. | 0.621 |
RC62_4014 | RC62_4018 | RC62_4014 | RC62_4018 | WbqC-like protein. | ParB-like partition protein; Belongs to the ParB family. | 0.520 |
RC62_4014 | RC62_4019 | RC62_4014 | RC62_4019 | WbqC-like protein. | Cobyrinic acid a,c-diamide synthase. | 0.520 |
RC62_4014 | dapB | RC62_4014 | RC62_4016 | WbqC-like protein. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.574 |
RC62_4015 | RC62_4014 | RC62_4015 | RC62_4014 | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | WbqC-like protein. | 0.727 |
RC62_4015 | RC62_4017 | RC62_4015 | RC62_4017 | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | Hypothetical protein. | 0.744 |
RC62_4015 | RC62_4018 | RC62_4015 | RC62_4018 | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | ParB-like partition protein; Belongs to the ParB family. | 0.637 |
RC62_4015 | RC62_4019 | RC62_4015 | RC62_4019 | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | Cobyrinic acid a,c-diamide synthase. | 0.613 |
RC62_4015 | dapB | RC62_4015 | RC62_4016 | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.702 |
RC62_4017 | RC62_4014 | RC62_4017 | RC62_4014 | Hypothetical protein. | WbqC-like protein. | 0.621 |
RC62_4017 | RC62_4015 | RC62_4017 | RC62_4015 | Hypothetical protein. | Signal peptidase I peptidase subfamily S26A; Belongs to the peptidase S26 family. | 0.744 |
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