STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4115Response regulator receiver protein. (222 aa)    
Predicted Functional Partners:
RC62_3625
GAF sensor hybrid histidine kinase.
  
 0.991
RC62_1238
Multi-sensor hybrid histidine kinase.
  
 0.984
RC62_2248
Multi-sensor hybrid histidine kinase/response regulator.
  
 0.927
RC62_4113
Putative signal transduction histidine kinase.
 
  0.880
RC62_4462
Histidine kinase.
 
  0.858
RC62_3577
DNA-binding domain-containing protein, AraC-type.
  
 0.760
RC62_3681
Signal transduction histidine kinase with CheB and CheR activity.
   
 0.695
RC62_744
Histidine kinase.
 
 0.656
RC62_3119
Putative signal transduction histidine kinase.
  
  0.645
RC62_3120
TPR repeat-containing protein.
  
  0.644
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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