STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4148Phytanoyl-CoA dioxygenase (PhyH) family. (336 aa)    
Predicted Functional Partners:
RC62_4107
Nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.631
RC62_4099
Nonribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.626
RC62_3634
PKD domain protein.
  
     0.586
RC62_4147
Microcystin dependent.
 
     0.583
RC62_888
Aspartyl/asparaginyl beta-hydroxylase.
  
  
  0.554
RC62_4149
PKD domain containing protein.
       0.546
RC62_3705
Phytanoyl-CoA dioxygenase.
 
     0.503
RC62_4112
Amino acid adenylation domain protein.
 
  
 0.500
RC62_3467
Hypothetical protein.
  
  
  0.482
lipB
Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
 
      0.456
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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