STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4235Uroporphyrinogen-III synthase. (249 aa)    
Predicted Functional Partners:
RC62_4611
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.978
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.925
RC62_4625
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 0.856
RC62_1747
Siroheme synthase-containing protein.
  
 
 0.843
RC62_4234
DUF4271 domain containing protein.
       0.806
RC62_2554
Hypothetical protein.
  
     0.767
RC62_3223
DUF4290 domain containing protein.
  
     0.766
RC62_1323
Uroporphyrin-III C-methyltransferase.
  
 
 0.765
RC62_1748
Uroporphyrin-III C-methyltransferase.
  
 
 0.765
RC62_473
GH3 auxin-responsive promoter.
  
     0.754
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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