STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4239Histidine kinase. (606 aa)    
Predicted Functional Partners:
RC62_4238
Two component transcriptional regulator, LuxR family.
 
  0.972
RC62_3625
GAF sensor hybrid histidine kinase.
  
 0.960
RC62_1292
Two component transcriptional regulator, LuxR family.
 
  0.884
RC62_394
Two component transcriptional regulator, LuxR family.
 
  0.884
RC62_4665
Transcriptional regulator.
 
  0.884
RC62_3126
Two component LuxR family transcriptional regulator.
 
  0.882
RC62_1341
Two component transcriptional regulator, LuxR family.
 
  0.881
RC62_3491
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  0.880
RC62_4461
Response regulator receiver protein.
  
  0.818
RC62_4116
Transcriptional regulator, LuxR family.
 
  0.813
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.