STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4402Outer membrane receptor for Fe3+-dicitrate. (901 aa)    
Predicted Functional Partners:
RC62_1895
Peptidase family M56, BlaR1.
  
  0.624
RC62_4403
Hypothetical protein.
       0.525
RC62_3997
Gram-negative bacterial tonB protein.
   
 0.524
RC62_4162
TonB family protein.
   
 0.524
RC62_1720
TonB family protein.
   
  0.501
RC62_261
Protein TonB.
   
  0.501
RC62_3087
Outer membrane transport energization protein TonB.
   
  0.501
RC62_3328
Hypothetical protein.
   
  0.501
RC62_474
Protein TonB.
   
  0.501
RC62_4102
Nonribosomal peptide synthetase.
  
  
 0.444
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.