STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_4582Adhesin; AidA-related. (2323 aa)    
Predicted Functional Partners:
RC62_4583
Putative Bacteroidetes-specific membrane protein.
 
     0.896
RC62_1132
Fn3 domain containing protein.
  
  0.664
RC62_4649
Putative Bacteroidetes-specific membrane protein.
  
     0.647
RC62_4652
SprC protein.
  
  
  0.626
RC62_4228
Hypothetical protein.
  
  0.545
RC62_4651
SprD protein.
  
  
  0.525
RC62_2219
Peptidase family S41 family protein.
  
  0.518
RC62_2384
Putative Bacteroidetes-specific membrane protein.
  
     0.514
RC62_4655
Hypothetical protein.
  
     0.498
RC62_3649
Hypothetical protein.
  
     0.497
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.