STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_50Two component transcriptional regulator, winged helix family. (223 aa)    
Predicted Functional Partners:
RC62_1238
Multi-sensor hybrid histidine kinase.
 
 0.999
RC62_3625
GAF sensor hybrid histidine kinase.
  
0.994
RC62_51
Integral membrane sensor signal transduction histidine kinase.
 
  0.973
RC62_4222
Integral membrane sensor signal transduction histidine kinase.
  0.944
RC62_3681
Signal transduction histidine kinase with CheB and CheR activity.
  
 0.942
RC62_3627
Two-component system sensor histidine kinase.
 
  0.923
RC62_3422
Signal transduction histidine kinase.
 
  0.922
RC62_2366
Integral membrane sensor signal transduction histidine kinase.
 
  0.919
RC62_3757
Methylase of chemotaxis methyl-accepting protein.
   
 0.916
RC62_1618
Histidine kinase.
  
  0.908
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.