STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_522ABC transporter related protein. (233 aa)    
Predicted Functional Partners:
RC62_1932
ABC-type transport system, involved in lipoprotein release, permease component.
 
 0.999
RC62_520
ABC-type antimicrobial peptide transport system, permease component.
 0.994
RC62_521
ABC-type antimicrobial peptide transport system, permease component.
 0.991
RC62_1797
ABC-type antimicrobial peptide transport system, permease component.
 0.986
RC62_840
ABC-type antimicrobial peptide transport system, permease component.
 0.983
RC62_519
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.948
RC62_2195
ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.807
RC62_4154
ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.807
RC62_518
Outer membrane efflux protein.
 
 
  0.798
RC62_517
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.778
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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