Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_528Cytochrome C oxidase subunit IV. (116 aa)    
Predicted Functional Partners:
RC62_529
Cytochrome c oxidase, subunit III.
 
  
  0.991
RC62_530
Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
  0.976
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
  0.975
RC62_1596
Cytochrome c oxidase subunit 2.
 
  
  0.963
RC62_1595
Cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family.
 
  
  0.924
RC62_527
Hypothetical protein.
 
     0.905
RC62_2546
Cytochrome c oxidase, cbb3-type subunit IV.
  
  
  0.892
RC62_2545
Cytochrome c, class I.
     
  0.875
RC62_2547
Bifunctional cbb3-type cytochrome c oxidase subunit I/II; Belongs to the heme-copper respiratory oxidase family.
     
  0.875
RC62_525
Putative membrane protein.
 
     0.723
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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