Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_620DUF4038 multi-domain protein. (464 aa)    
Predicted Functional Partners:
RC62_621
Hypothetical protein.
 
     0.894
RC62_618
Putative beta-D-glycosidase/alpha-L-glycosidase Glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.868
RC62_617
BNR 2 domain containing protein.
 
    0.846
RC62_615
Dienelactone hydrolase-like enzyme.
 
     0.834
RC62_622
Putative pectin or pectate lyase Polysaccharide lyase family 1.
 
    0.826
RC62_645
Beta helix domain containing protein.
 
  
  0.816
RC62_634
Glycoside hydrolase.
  
  0.815
RC62_609
Hypothetical protein.
 
    0.808
RC62_610
Sugar phosphate isomerase/epimerase.
 
  
  0.808
RC62_613
Glycogen debranching enzyme.
 
    0.800
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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