Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_705Sigma-54 dependent DNA-binding response regulator. (433 aa)    
Predicted Functional Partners:
RC62_3625
GAF sensor hybrid histidine kinase.
  
 0.952
RC62_2248
Multi-sensor hybrid histidine kinase/response regulator.
  
 0.895
RC62_1238
Multi-sensor hybrid histidine kinase.
  
 0.893
RC62_3757
Methylase of chemotaxis methyl-accepting protein.
  
 
 0.876
RC62_3681
Signal transduction histidine kinase with CheB and CheR activity.
  
 0.836
RC62_4261
RNA polymerase sigma-54 factor.
 
  
 0.815
RC62_3577
DNA-binding domain-containing protein, AraC-type.
   
 0.716
RC62_3623
Histidine kinase.
  
 
 0.660
RC62_2819
Multi-sensor signal transduction histidine kinase.
  
 
 0.636
RC62_2249
Response regulator receiver sensor/signal transduction histidine kinase.
   
 0.626
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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