STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_753Molybdopterin dehydrogenase, FAD-binding. (326 aa)    
Predicted Functional Partners:
RC62_752
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 0.995
RC62_754
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
 0.995
RC62_3656
Hydroxylase large subunit.
 0.980
RC62_3658
(2Fe-2S)-binding domain protein.
 
 0.978
RC62_757
Alanine dehydrogenase.
 
 
 0.893
RC62_756
MobA-like protein.
 
 
 0.805
RC62_2965
Glutamate synthase (NADH) large subunit.
    
  0.642
RC62_755
Class V aminotransferase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.508
RC62_2282
Deaminase.
  
 
  0.507
tadA
CMP/dCMP deaminase, zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.495
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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