STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC62_78ABC transporter-like protein. (259 aa)    
Predicted Functional Partners:
RC62_77
ABC-type transport, permease component; Involved in resistance to organic solvents; Belongs to the MlaE permease family.
 0.999
RC62_79
ABC-type transport system, periplasmic component; Involved in resistance to organic solvents.
 
 0.998
RC62_3079
ABC-type transport system involved in resistance to organic solvent, permease component.
 
 0.991
RC62_1435
ABC-type transport system involved in resistance to organic solvent, periplasmic component.
  
 0.970
RC62_3080
ABC transporter related protein.
  
  
 
0.919
RC62_3723
Anti-sigma-factor antagonist.
   
  0.849
RC62_3724
Anti-sigma-factor antagonist.
   
  0.849
RC62_80
AsmA family protein.
       0.645
RC62_81
Putative small integral membrane protein.
       0.645
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.553
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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