Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RC62_1854 | RC62_93 | RC62_1854 | RC62_93 | TonB-linked outer membrane protein, SusC/RagA family. | RagB/SusD domain protein. | 0.587 |
RC62_2055 | RC62_93 | RC62_2055 | RC62_93 | SusC-like TonB-dependent receptor. | RagB/SusD domain protein. | 0.658 |
RC62_2055 | RC62_97 | RC62_2055 | RC62_97 | SusC-like TonB-dependent receptor. | Tetratricopeptide repeat protein. | 0.567 |
RC62_4041 | RC62_93 | RC62_4041 | RC62_93 | SusC-like TonB-dependent receptor. | RagB/SusD domain protein. | 0.604 |
RC62_4449 | RC62_93 | RC62_4449 | RC62_93 | TonB-linked outer membrane protein, SusC/RagA family. | RagB/SusD domain protein. | 0.580 |
RC62_92 | RC62_93 | RC62_92 | RC62_93 | Glycosyl hydrolase family 71. | RagB/SusD domain protein. | 0.597 |
RC62_92 | RC62_94 | RC62_92 | RC62_94 | Glycosyl hydrolase family 71. | SusC-like TonB-dependent receptor. | 0.540 |
RC62_92 | RC62_97 | RC62_92 | RC62_97 | Glycosyl hydrolase family 71. | Tetratricopeptide repeat protein. | 0.666 |
RC62_93 | RC62_1854 | RC62_93 | RC62_1854 | RagB/SusD domain protein. | TonB-linked outer membrane protein, SusC/RagA family. | 0.587 |
RC62_93 | RC62_2055 | RC62_93 | RC62_2055 | RagB/SusD domain protein. | SusC-like TonB-dependent receptor. | 0.658 |
RC62_93 | RC62_4041 | RC62_93 | RC62_4041 | RagB/SusD domain protein. | SusC-like TonB-dependent receptor. | 0.604 |
RC62_93 | RC62_4449 | RC62_93 | RC62_4449 | RagB/SusD domain protein. | TonB-linked outer membrane protein, SusC/RagA family. | 0.580 |
RC62_93 | RC62_92 | RC62_93 | RC62_92 | RagB/SusD domain protein. | Glycosyl hydrolase family 71. | 0.597 |
RC62_93 | RC62_94 | RC62_93 | RC62_94 | RagB/SusD domain protein. | SusC-like TonB-dependent receptor. | 0.929 |
RC62_93 | RC62_95 | RC62_93 | RC62_95 | RagB/SusD domain protein. | Hypothetical protein. | 0.630 |
RC62_93 | RC62_951 | RC62_93 | RC62_951 | RagB/SusD domain protein. | TonB-linked outer membrane protein, SusC/RagA family. | 0.633 |
RC62_93 | RC62_97 | RC62_93 | RC62_97 | RagB/SusD domain protein. | Tetratricopeptide repeat protein. | 0.577 |
RC62_93 | atpE | RC62_93 | RC62_1586 | RagB/SusD domain protein. | Hypothetical protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.963 |
RC62_94 | RC62_92 | RC62_94 | RC62_92 | SusC-like TonB-dependent receptor. | Glycosyl hydrolase family 71. | 0.540 |
RC62_94 | RC62_93 | RC62_94 | RC62_93 | SusC-like TonB-dependent receptor. | RagB/SusD domain protein. | 0.929 |
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