Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC62_950Transcriptional regulator, AraC family. (292 aa)    
Predicted Functional Partners:
RC62_949
Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
 
     0.799
RC62_946
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
 
     0.780
RC62_947
Putative glycosylase; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.
 
     0.758
RC62_953
Cell surface receptor IPT/TIG domain protein.
 
     0.746
RC62_952
RagB/SusD family protein.
 
     0.736
RC62_951
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.622
RC62_2965
Glutamate synthase (NADH) large subunit.
     
  0.579
RC62_2056
RagB/SusD domain protein.
  
     0.558
RC62_941
GDSL family lipase.
 
     0.530
RC62_945
Putative beta-glycosidase Glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.491
Your Current Organism:
Flavobacterium aquidurense
NCBI taxonomy Id: 362413
Other names: CIP 109242, DSM 18293, F. aquidurense, Flavobacterium aquidurense Cousin et al. 2007 emend. Kim et al. 2014, Flavobacterium aquidurense Cousin et al. 2007 emend. Loch and Faisal 2014, Flavobacterium sp. WB-1.1.56, Flavobacterium sp. WB1.1-14, Flavobacterium sp. WB1.1-4, Flavobacterium sp. WB1.1-57, Flavobacterium sp. WB1.1-63, WB 1.1-56
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