STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW19_07805DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)    
Predicted Functional Partners:
IW19_04110
Crystallin J1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
IW19_12800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
  0.536
IW19_12815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
IW19_12810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
IW19_12805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
IW19_03405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 
 0.506
IW19_04080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
IW19_04100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
Your Current Organism:
Flavobacterium reichenbachii
NCBI taxonomy Id: 362418
Other names: CIP 109866, DSM 21791, F. reichenbachii, Flavobacterium reichenbachii Ali et al. 2009, Flavobacterium sp. WB 3.2-61, WB 3.2-61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.