STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW19_11805FemAB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
IW19_11795
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
IW19_11800
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.845
IW19_11775
WxcM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.759
IW19_11785
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
IW19_06905
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
IW19_05090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
IW19_00085
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
IW19_11810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
IW19_16420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
IW19_16025
Peptidase C25; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
Your Current Organism:
Flavobacterium reichenbachii
NCBI taxonomy Id: 362418
Other names: CIP 109866, DSM 21791, F. reichenbachii, Flavobacterium reichenbachii Ali et al. 2009, Flavobacterium sp. WB 3.2-61, WB 3.2-61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.