STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW19_24055Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.808
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
  0.807
IW19_09595
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.670
IW19_12205
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.607
IW19_24045
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
IW19_05195
Cytochrome C4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.597
IW19_18900
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.515
IW19_17355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
IW19_02225
Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.476
Your Current Organism:
Flavobacterium reichenbachii
NCBI taxonomy Id: 362418
Other names: CIP 109866, DSM 21791, F. reichenbachii, Flavobacterium reichenbachii Ali et al. 2009, Flavobacterium sp. WB 3.2-61, WB 3.2-61
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