STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW19_24090Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
IW19_12205
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.735
IW19_12790
Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.714
IW19_07595
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.673
IW19_18650
Flavodoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.662
IW19_15105
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.644
IW19_12800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.624
IW19_18345
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.606
IW19_18410
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.606
IW19_24095
Methionine aminotransferase; Catalyzes the transfer of an amino moiety; preference for methionine followed by histidine and phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.598
IW19_18435
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.597
Your Current Organism:
Flavobacterium reichenbachii
NCBI taxonomy Id: 362418
Other names: CIP 109866, DSM 21791, F. reichenbachii, Flavobacterium reichenbachii Ali et al. 2009, Flavobacterium sp. WB 3.2-61, WB 3.2-61
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