Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALD66081.1 | ALD66642.1 | SCANT_v1c01710 | SCANT_v1c07360 | ABC transporter ATP-binding protein. | Bacteriocin ABC transporter. | 0.705 |
ALD66081.1 | msbA | SCANT_v1c01710 | SCANT_v1c03270 | ABC transporter ATP-binding protein. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.662 |
ALD66120.1 | ALD66461.1 | SCANT_v1c02100 | SCANT_v1c05550 | Hypothetical protein. | ABC transporter ATP-binding protein. | 0.567 |
ALD66120.1 | ALD66642.1 | SCANT_v1c02100 | SCANT_v1c07360 | Hypothetical protein. | Bacteriocin ABC transporter. | 0.626 |
ALD66120.1 | msbA | SCANT_v1c02100 | SCANT_v1c03270 | Hypothetical protein. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.672 |
ALD66461.1 | ALD66120.1 | SCANT_v1c05550 | SCANT_v1c02100 | ABC transporter ATP-binding protein. | Hypothetical protein. | 0.567 |
ALD66461.1 | ALD66787.1 | SCANT_v1c05550 | SCANT_v1c08810 | ABC transporter ATP-binding protein. | Putative acyl carrier protein. | 0.404 |
ALD66461.1 | msbA | SCANT_v1c05550 | SCANT_v1c03270 | ABC transporter ATP-binding protein. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.667 |
ALD66461.1 | potA | SCANT_v1c05550 | SCANT_v1c01360 | ABC transporter ATP-binding protein. | Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. | 0.613 |
ALD66642.1 | ALD66081.1 | SCANT_v1c07360 | SCANT_v1c01710 | Bacteriocin ABC transporter. | ABC transporter ATP-binding protein. | 0.705 |
ALD66642.1 | ALD66120.1 | SCANT_v1c07360 | SCANT_v1c02100 | Bacteriocin ABC transporter. | Hypothetical protein. | 0.626 |
ALD66642.1 | lptB | SCANT_v1c07360 | SCANT_v1c05890 | Bacteriocin ABC transporter. | Lipopolysaccharide export system ATP-binding protein. | 0.746 |
ALD66642.1 | msbA | SCANT_v1c07360 | SCANT_v1c03270 | Bacteriocin ABC transporter. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.842 |
ALD66787.1 | ALD66461.1 | SCANT_v1c08810 | SCANT_v1c05550 | Putative acyl carrier protein. | ABC transporter ATP-binding protein. | 0.404 |
ALD66787.1 | infB | SCANT_v1c08810 | SCANT_v1c03470 | Putative acyl carrier protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.810 |
ALD66787.1 | msbA | SCANT_v1c08810 | SCANT_v1c03270 | Putative acyl carrier protein. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.723 |
infB | ALD66787.1 | SCANT_v1c03470 | SCANT_v1c08810 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Putative acyl carrier protein. | 0.810 |
infB | msbA | SCANT_v1c03470 | SCANT_v1c03270 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.658 |
lonA | msbA | SCANT_v1c03260 | SCANT_v1c03270 | Class III heat-shock ATP-dependent LonA protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | ATP-binding cassette, subfamily B, bacterial MsbA. | 0.656 |
lptB | ALD66642.1 | SCANT_v1c05890 | SCANT_v1c07360 | Lipopolysaccharide export system ATP-binding protein. | Bacteriocin ABC transporter. | 0.746 |
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