Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LSL_0037Hypothetical membrane spanning protein; COG0718 [S] Uncharacterized protein conserved in bacteria. (445 aa)    
Predicted Functional Partners:
LSL_0038
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
  
 0.987
LSL_0036
Two-component sensor kinase yycG; COG0642 [T] Signal transduction histidine kinase.
 
  
 0.938
LSL_0035
COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 0.821
phnP
COG1235 [R] Metal-dependent hydrolases of the beta-lactamase superfamily I.
  
  
 0.756
LSL_1300
Conserved hypothetical protein.
  
     0.699
LSL_1593
COG4858 [S] Uncharacterized membrane-bound protein conserved in bacteria.
  
     0.695
mreD
COG1792 [M] Cell shape-determining protein.
  
     0.685
LSL_0367
Sigma-70 factor family protein.
  
     0.658
LSL_0861
Conserved hypothetical protein.
  
     0.628
LSL_1143
PTS system, glucitol/sorbitol-specific IIA component; COG3731 [G] Phosphotransferase system sorbitol-specific component IIA.
  
     0.620
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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