STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0044Oxidoreductase; COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases. (215 aa)    
Predicted Functional Partners:
LSL_0046
Short chain dehydrogenase; COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.817
LSL_0045
Hypothetical protein; COG1522 [K] Transcriptional regulators.
       0.753
LSL_0387
Hypothetical protein.
  
     0.482
LSL_0047
Conserved hypothetical protein.
       0.475
LSL_1582
NADPH-dependent FMN reductase.
 
     0.469
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.464
wecD-7
Acetyltransferase.
   
    0.461
LSL_0434
Phosphoesterase; COG4186 [R] Predicted phosphoesterase or phosphohydrolase.
  
     0.460
LSL_1565
Conserved hypothetical protein; COG3593 [L] Predicted ATP-dependent endonuclease of the OLD family.
   
    0.457
degP
Endopeptidase; COG0265 [O] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
 
    0.443
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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