Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ktrBPotassium uptake protein ktrB; COG0168 [P] Trk-type K+ transport systems, membrane components. (462 aa)    
Predicted Functional Partners:
ktrA
Potassium uptake protein; COG0569 [P] K+ transport systems, NAD-binding component.
 
 0.996
eriC
COG0038 [P] Chloride channel protein EriC.
  
 
 0.837
napA
Na+/H+ antiporter; COG0475 [P] Kef-type K+ transport systems, membrane components.
  
 
 0.830
LSL_0615
16S rRNA m(5)C 967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.627
LSL_0070
COG2738 [R] Predicted Zn-dependent protease.
       0.520
amyB
Neopullulanase / Cyclomaltodextrinase / Maltogenic alpha-amylase; COG0366 [G] Glycosidases; Belongs to the glycosyl hydrolase 13 family.
       0.508
LSL_0071
N-acetylglucosaminyltransferase; COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
       0.467
metG
Methionyl-tRNA synthetase / Protein secretion chaperonin CsaA; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.439
pheT
COG0072 [J] Phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.439
scrA
PTS system, sucrose-specific IIABC component; COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
     
 0.432
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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