Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0072Hypothetical protein. (90 aa)    
Predicted Functional Partners:
LSL_0448
Hypothetical protein.
  
     0.717
LSL_0073
COG0344 [S] Predicted membrane protein.
 
     0.660
LSL_1449
Hypothetical exported protein; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
  
     0.653
LSL_0335
Hypothetical secreted protein.
  
     0.599
LSL_0703
Integrase/recombinase xerD.
 
     0.589
LSL_1487
Hypothetical membrane spanning protein.
  
     0.534
LSL_1690
Hypothetical membrane spanning protein.
  
     0.505
LSL_0606
Hypothetical protein.
  
     0.503
LSL_0334
Hypothetical secreted protein.
  
     0.468
LSL_0528
Conserved hypothetical protein.
  
     0.468
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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