Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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dacCCOG1686 [M] D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (418 aa)    
Predicted Functional Partners:
LSL_1088
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
  
 
 0.946
LSL_1053
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
  
 
 0.936
mrcA
Multimodular transpeptidase-transglycosylase PBP 2A; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
  
 
 0.916
mrcA-2
Multimodular transpeptidase-transglycosylase PBP 1A; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
  
 
 0.916
dacC-2
COG1686 [M] D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.914
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
  
 0.463
LSL_0076
Transcriptional regulator, DeoR family; COG1349 [KG] Transcriptional regulators of sugar metabolism.
  
    0.452
LSL_0074
BioY protein; COG0011 [S] Uncharacterized conserved protein.
       0.427
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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